Simulate observed ATAC-seq matrix given technical noise and the true counts
Source:R/6_technoise.R
True2ObservedATAC.Rd
Simulate observed ATAC-seq matrix given technical noise and the true counts
Arguments
- atacseq_data
true ATAC-seq data
- randseed
(should produce same result if nregions, nevf and randseed are all the same)
- observation_prob
for each integer count of a particular region for a particular cell, the probability the count will be observed
- sd_frac
the fraction of ATAC-seq data value used as the standard deviation of added normally distrubted noise
Examples
results <- sim_example_200_cells()
#> Time spent: 0.01 mins
True2ObservedATAC(results$atac_counts, randseed = 1)
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