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Plot cell locations

Source: R/7_benchmark.R
plot_cell_loc.Rd

Plot cell locations

Usage

plot_cell_loc(
  results = .getResultsFromGlobal(),
  size = 4,
  show.label = FALSE,
  show.arrows = TRUE,
  lr.pair = 1,
  .cell.pop = NULL,
  .locs = NULL
)

Arguments

results

The scMultisim result object

size

Fig size

show.label

Show cell numbers

show.arrows

Show arrows representing cell-cell interactions

lr.pair

The ligand-receptor pair used to plot CCI arrows results$cci_cell_type_param[lr.pair]

.cell.pop

Specify the cell population metadata

Value

none

Examples

results <- sim_example_200_cells_spatial()
#> CCI simulation is enabled.
#> Get CIF...100..200..Done
#> Get params...Done
#> Simulating...50..100..150..200..
#> Time spent: 2.17 mins
plot_cell_loc(results)